1 196 Yes 160/193 (82%) 175/193 (90%) Bdellovibrio bacteriovorus NP_970444.1 197 No 126/194 (64%) 161/194 (92%) Deinococcus
radiodurans NP_294577.1 196 Yes 119/194 (61%) 156/194 (80%) Thermus thermophilus AP008226.1 196 Yes 121/195 (62%) 153/192 (78%) Chloroflexus aurantiacus YP_001635661.1 195 Yes 105/195 (53%) 142/195 (72%) Desulfotalea psychrophila LSv54 YP_066512.1 201 Yes 91/202 (45%) 127/202 (62%) Aquifex aeolicus VF5 NP_214074.1 190 No 81/186 (43%) 115/186 (61%) Group II: MglA2 proteins Fibrobacter succinogenes CP001792.1 SCH727965 313 No 119/192 (58%) 149/192 (78%) Myxococcus xanthus AAL56599.1 281 No 81/182 (44%) 120/182 (65%) Geobacter metallireducens ZP_00080378.1 225 No 82/180 (45%) 112/180 (62%) Geobacter sulfurreducens NP_952979.1 291 No 76/192 (39%) 113/192 (58%) Eukaryotic GTPases related to MglA proteins Ustilago maydis EAK87233.1 189 No 43/151 (28%) 72/151 (47%) Saccharomyces cerevisiae Sar1p NP_015106.1 190 No 46/157 (29%) 69/157 (43%) Dictyostelium discoideum AX4 ADP-ribosylation-like protein 8 XP_639087.1 185 No 43/141 (30%) 70/141 (49%) a MglB partner is denoted as an open Saracatinib reading frame immediately upstream from MglA with an identifiable Roadblock/LC7 motif. bValues for identity and positives (similarity) are selleck compound relative to the 195 amino acid protein MglA from Myxococcus xanthus.
BLAST analysis was performed as described [63]. Identity and positives show the number of identical (positive) residues as a fraction of the total number of residues used for alignment. This fraction is given beneath as a percentage. The MglA-like proteins fall into two groups based on their sizes. Group 1 proteins range in size from 190 to 197 amino acids, similar to Ras (189 amino acids). Group 2 proteins range in size from 225 to 327 amino acids. Homologs in this group have additional C-terminal domain of unknown function. A comparison
of identity and similarity between M. xanthus MglA and its group 1 and 2 homologs, including those from Geobacter GBA3 sulfurreducens, Bdellovibrio bacteriovorus, Thermus thermophilus, and Chloroflexus aurantiacus, is shown in Table 2. An alignment between M. xanthus MglA and its group 1 homologs, including those from G. metallireducens, B. bacteriovorus, T. thermophilus, and Deinococcus radiodurans, is shown in Figure 8. Figure 8 MglA represents a new family of monomeric GTPases in prokaryotes. Shown is the alignment of the predicted sequences of MglA from M. xanthus with Deinococccus radiodurans, Thermus thermophilus, Bdellovibrio bacteriovorus, and Geobacter metallireducens. Conserved sequence elements (PM1, PM3 and G2) for GTP binding are boxed. Consensus: Upper case letter = conserved in all five proteins listed; lower case letter = conserved in at least 3 of 5 proteins; * = conservative substitution; + = semi-conservative substitution; . = no conservation.