To determine the effect of urea and nickel on production of urease, Epigenetics inhibitor medium was supplemented with urea (16.7 mM) or NiCl2 (up to 200 μM). Native and SDS PAGE Cell-free extracts from different biovars of Y. enterocolitica were electrophoresed on non-denaturing polyacrylamide gel . Briefly, extract containing ca. 100 μg of protein was mixed with 1× tracking dye and loaded on 5% resolving gel in 380 mM Tris-HCl (pH 8.8) with 4% stacking gel in 63 mM Tris-HCl (pH 6.8) in a mini-Protein III apparatus (Bio-Rad). Samples were electrophoresed with Tris-Glycine (pH 8.4) as the running buffer at 70 V for 2 h at 4°C. The gel was removed and equilibrated with 5-10 changes
of solution containing 0.02% CH5424802 solubility dmso cresol red and 0.1% EDTA until the entire gel turned yellow. After draining the solution, gel was flooded with 1.5% (w/v) solution of urea. The pink bands of urease were recorded by scanning (UMAX Astra 3600). Urease from jack bean (Sigma) was used as the
marker. SDS-PAGE was performed as per standard protocol . Briefly, extract containing 25 μg of protein was boiled in reducing Laemmli sample buffer and Ispinesib mouse separated on 12% polyacrylamide gel. Isoelectric focusing (IEF) IEF of the cell extract was carried out in 6% polyacrylamide gel containing 2% ampholyte of pH 3-10 (Biolyte Ampholyte, Bio-Rad). 3-5 μl of extract containing ca. 20-25 μg of protein was loaded on the gel and focused at 4°C using a Mini IEF cell (Bio-Rad) according to the manufacturer’s instructions. After focusing, the gel was equilibrated with a solution containing 0.02% cresol red and 0.1% EDTA. Urease bands were visualized by superimposing the gel with Whatman No. 1 filter paper
presaturated with cresol red-EDTA solution containing 1.5% urea. Urease appeared as pink band against a yellow background. Broad range IEF standard with pI 4.45-9.6 (Bio-Rad) was used as the pI marker to determine the isoelectric point of the urease. Survival of Y. enterocolitica in acidic pH in vitro The in vitro survival of Y. enterocolitica was performed by slight modification of the method reported earlier . Briefly, ten microlitre of the bacterial suspension was added to 1 ml of 20 mM sodium phosphate (for pH 2.5 and Niclosamide 7.0) or 100 mM citrate (for pH 4.0) buffer with or without 3.4 mM urea in 0.6% NaCl, and prewarmed to 37°C to give an initial count of ca. 7.0 log10CFU/ml. The contents were mixed and incubated with shaking at 37°C for 2 h. At the end of the incubation, samples were removed and diluted serially in 20 mM sodium phosphate buffer (pH 7.0). 0.1 ml of an appropriate dilution was plated on LB agar to determine CFU/ml. At conclusion of each assay, the pH of the buffer was recorded. All assays were repeated at least thrice on separate occasions. Statistical analysis The mean and the standard deviation for each data set were calculated using Microsoft Excel 2003 software (Microsoft Corporation, Redmond, Wash.).